A new VivoScript will be available with the release of VivoQuant 1.23: the Onion Tool. This tool allows the user to select a Region of Interest that he or she has segmented, and perform layer-based analysis. The tool operates on any ROI present in the 3D ROI Tool, and is configurable to fit your specific analysis needs.
The iPACS reporting engine is a powerful tool to access iPACS’ object relational database (where for instance projects, patients, studies, datapoints, study planner events, etc… are stored) as well as the file-based WebDisk and export the data in for instance PDF, Excel Spreadsheets, CSV, plain text, XML, etc… In this example I would like to show a small example on how to export the projects table in form of a native Excel spreadsheet, including links and formats.
Histogram based auto-thresholding (based on Otsu’s algorithm) is a great way to automatically segment two Gaussian distributions of values, e.g. background vs. animal. In this post we are looking into automating this process and placing the segmentation function into a library file so it can be reused in other scripts.